Cluster: HRGMv2_2119_CGC22
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_14 | HRGMv2_2119_14_32 | 38794 | 40224 | - | 2.A.25.1.9 |
| pfam | HRGMv2_2119_14 | HRGMv2_2119_14_33 | 40459 | 42882 | - | FtsX | FtsX |
| TC | HRGMv2_2119_14 | HRGMv2_2119_14_34 | 42884 | 43585 | - | 3.A.1.134.11 |
| STP | HRGMv2_2119_14 | HRGMv2_2119_14_35 | 43807 | 44550 | - | TetR_N |
| STP | HRGMv2_2119_14 | HRGMv2_2119_14_36 | 44571 | 45842 | - | SBP_bac_1 |
| TC | HRGMv2_2119_14 | HRGMv2_2119_14_37 | 45858 | 47351 | - | 9.B.34.1.2 |
| pfam | HRGMv2_2119_14 | HRGMv2_2119_14_38 | 47412 | 47870 | - | PTPS |
| NULL(UNKNOWN) | HRGMv2_2119_14 | HRGMv2_2119_14_39 | 47867 | 48937 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2119_14 | HRGMv2_2119_14_40 | 48921 | 50306 | - | GT2 |
Gene ID: HRGMv2_2119_14_32
Type: TC
Location: 38794 - 40224 (-)
Type: TC
Location: 38794 - 40224 (-)
Gene ID: HRGMv2_2119_14_33
Type: pfam
Location: 40459 - 42882 (-)
Type: pfam
Location: 40459 - 42882 (-)
Gene ID: HRGMv2_2119_14_34
Type: TC
Location: 42884 - 43585 (-)
Type: TC
Location: 42884 - 43585 (-)
Gene ID: HRGMv2_2119_14_35
Type: STP
Location: 43807 - 44550 (-)
Type: STP
Location: 43807 - 44550 (-)
Gene ID: HRGMv2_2119_14_36
Type: STP
Location: 44571 - 45842 (-)
Type: STP
Location: 44571 - 45842 (-)
Gene ID: HRGMv2_2119_14_37
Type: TC
Location: 45858 - 47351 (-)
Type: TC
Location: 45858 - 47351 (-)
Gene ID: HRGMv2_2119_14_38
Type: pfam
Location: 47412 - 47870 (-)
Type: pfam
Location: 47412 - 47870 (-)
Gene ID: HRGMv2_2119_14_39
Type:
Location: 47867 - 48937 (-)
Type:
Location: 47867 - 48937 (-)
Gene ID: HRGMv2_2119_14_40
Type: CAZyme
Location: 48921 - 50306 (-)
Type: CAZyme
Location: 48921 - 50306 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2119_14_33 | vegetarian > vegan | 1.21997 | 0.01057 |
| HRGMv2_2119_14_34 | vegetarian > omnivore | 1.02393 | 0.01497 |
| HRGMv2_2119_14_35 | vegan > omnivore | 1.46359 | 0.03578 |