Cluster: HRGMv2_2119_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- CGC Family ID: CGCFAM_03956
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_13 | HRGMv2_2119_13_15 | 15151 | 16029 | + | 2.A.115.1.1 |
| pfam | HRGMv2_2119_13 | HRGMv2_2119_13_16 | 16266 | 17618 | - | MatE | MatE | MurJ |
| TF | HRGMv2_2119_13 | HRGMv2_2119_13_17 | 17724 | 18203 | - | HTH_3 |
| CAZyme | HRGMv2_2119_13 | HRGMv2_2119_13_18 | 18414 | 19568 | - | CBM35inCE17 | CE17 |
Gene ID: HRGMv2_2119_13_15
Type: TC
Location: 15151 - 16029 (+)
Type: TC
Location: 15151 - 16029 (+)
Gene ID: HRGMv2_2119_13_16
Type: pfam
Location: 16266 - 17618 (-)
Type: pfam
Location: 16266 - 17618 (-)
Gene ID: HRGMv2_2119_13_17
Type: TF
Location: 17724 - 18203 (-)
Type: TF
Location: 17724 - 18203 (-)
Gene ID: HRGMv2_2119_13_18
Type: CAZyme
Location: 18414 - 19568 (-)
Type: CAZyme
Location: 18414 - 19568 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.