Cluster: HRGMv2_2119_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2119
- CGC Family ID: CGCFAM_00032
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2119_12 | HRGMv2_2119_12_21 | 31294 | 32025 | + | GT2 |
| pfam | HRGMv2_2119_12 | HRGMv2_2119_12_22 | 32087 | 33310 | + | UDPGP |
| pfam | HRGMv2_2119_12 | HRGMv2_2119_12_23 | 33393 | 33596 | - | HicB |
| CAZyme | HRGMv2_2119_12 | HRGMv2_2119_12_24 | 33632 | 34378 | - | GT2 |
| TC | HRGMv2_2119_12 | HRGMv2_2119_12_25 | 34416 | 35891 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_2119_12_21
Type: CAZyme
Location: 31294 - 32025 (+)
Type: CAZyme
Location: 31294 - 32025 (+)
Gene ID: HRGMv2_2119_12_22
Type: pfam
Location: 32087 - 33310 (+)
Type: pfam
Location: 32087 - 33310 (+)
Gene ID: HRGMv2_2119_12_23
Type: pfam
Location: 33393 - 33596 (-)
Type: pfam
Location: 33393 - 33596 (-)
Gene ID: HRGMv2_2119_12_24
Type: CAZyme
Location: 33632 - 34378 (-)
Type: CAZyme
Location: 33632 - 34378 (-)
Gene ID: HRGMv2_2119_12_25
Type: TC
Location: 34416 - 35891 (-)
Type: TC
Location: 34416 - 35891 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.