Cluster: HRGMv2_2119_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2119
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2119_9 | HRGMv2_2119_9_14 | 13161 | 14609 | + | GH1 |
| NULL(UNKNOWN) | HRGMv2_2119_9 | HRGMv2_2119_9_15 | 14817 | 16262 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2119_9 | HRGMv2_2119_9_16 | 16394 | 18970 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | HRGMv2_2119_9 | HRGMv2_2119_9_17 | 19197 | 20219 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2119_9 | HRGMv2_2119_9_18 | 20267 | 21229 | + | GT2 |
Gene ID: HRGMv2_2119_9_14
Type: CAZyme
Location: 13161 - 14609 (+)
Type: CAZyme
Location: 13161 - 14609 (+)
Gene ID: HRGMv2_2119_9_15
Type:
Location: 14817 - 16262 (+)
Type:
Location: 14817 - 16262 (+)
Gene ID: HRGMv2_2119_9_16
Type: TC
Location: 16394 - 18970 (+)
Type: TC
Location: 16394 - 18970 (+)
Gene ID: HRGMv2_2119_9_17
Type:
Location: 19197 - 20219 (+)
Type:
Location: 19197 - 20219 (+)
Gene ID: HRGMv2_2119_9_18
Type: CAZyme
Location: 20267 - 21229 (+)
Type: CAZyme
Location: 20267 - 21229 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2119_9_15 | vegetarian > vegan | 1.25368 | 0.01057 |