Cluster: HRGMv2_2119_CGC18
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2119
- CGC Family ID: CGCFAM_02244
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2119_8 | HRGMv2_2119_8_47 | 54388 | 54957 | + | 3.A.1.25.5 |
| TF | HRGMv2_2119_8 | HRGMv2_2119_8_48 | 55116 | 55448 | + | HTH_3 |
| CAZyme | HRGMv2_2119_8 | HRGMv2_2119_8_49 | 55442 | 57007 | - | CBM50 |
| pfam | HRGMv2_2119_8 | HRGMv2_2119_8_50 | 57050 | 57649 | - | PrcB_C |
| pfam | HRGMv2_2119_8 | HRGMv2_2119_8_51 | 57697 | 59529 | - | tRNA-synt_2 | tRNA_anti-codon | GAD |
| TC | HRGMv2_2119_8 | HRGMv2_2119_8_52 | 59585 | 60199 | - | 8.A.59.4.1 |
Gene ID: HRGMv2_2119_8_47
Type: TC
Location: 54388 - 54957 (+)
Type: TC
Location: 54388 - 54957 (+)
Gene ID: HRGMv2_2119_8_48
Type: TF
Location: 55116 - 55448 (+)
Type: TF
Location: 55116 - 55448 (+)
Gene ID: HRGMv2_2119_8_49
Type: CAZyme
Location: 55442 - 57007 (-)
Type: CAZyme
Location: 55442 - 57007 (-)
Gene ID: HRGMv2_2119_8_50
Type: pfam
Location: 57050 - 57649 (-)
Type: pfam
Location: 57050 - 57649 (-)
Gene ID: HRGMv2_2119_8_51
Type: pfam
Location: 57697 - 59529 (-)
Type: pfam
Location: 57697 - 59529 (-)
Gene ID: HRGMv2_2119_8_52
Type: TC
Location: 59585 - 60199 (-)
Type: TC
Location: 59585 - 60199 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp934247115
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.