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Cluster: HRGMv2_2119_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2119_4 HRGMv2_2119_4_31 33715 34338 + 9.A.11.1.1
TC HRGMv2_2119_4 HRGMv2_2119_4_32 34328 34744 + 9.A.11.1.1
TC HRGMv2_2119_4 HRGMv2_2119_4_33 34842 35294 + 9.A.11.1.1
pfam HRGMv2_2119_4 HRGMv2_2119_4_34 35450 35830 + DUF3783
pfam HRGMv2_2119_4 HRGMv2_2119_4_35 35870 37684 + VanW
TC HRGMv2_2119_4 HRGMv2_2119_4_36 38074 39429 - 2.A.49.9.2
TC HRGMv2_2119_4 HRGMv2_2119_4_37 39622 40650 + 9.A.11.1.1
pfam HRGMv2_2119_4 HRGMv2_2119_4_38 40654 41010 + SpoVAC_SpoVAEB
CAZyme HRGMv2_2119_4 HRGMv2_2119_4_39 41068 43797 - GT51
Gene ID: HRGMv2_2119_4_31
Type: TC
Location: 33715 - 34338 (+)
Gene ID: HRGMv2_2119_4_32
Type: TC
Location: 34328 - 34744 (+)
Gene ID: HRGMv2_2119_4_33
Type: TC
Location: 34842 - 35294 (+)
Gene ID: HRGMv2_2119_4_34
Type: pfam
Location: 35450 - 35830 (+)
Gene ID: HRGMv2_2119_4_35
Type: pfam
Location: 35870 - 37684 (+)
Gene ID: HRGMv2_2119_4_36
Type: TC
Location: 38074 - 39429 (-)
Gene ID: HRGMv2_2119_4_37
Type: TC
Location: 39622 - 40650 (+)
Gene ID: HRGMv2_2119_4_38
Type: pfam
Location: 40654 - 41010 (+)
Gene ID: HRGMv2_2119_4_39
Type: CAZyme
Location: 41068 - 43797 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2119_4_33 vegan > omnivore 1.59988 0.03578

🧭 Explore Read Mapping of CGC

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