Cluster: HRGMv2_2117_CGC8
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- CGC Family ID: CGCFAM_01232
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_13 | HRGMv2_2117_13_8 | 9075 | 9989 | - | 3.A.1.132.7 |
| TC | HRGMv2_2117_13 | HRGMv2_2117_13_9 | 9967 | 10932 | - | 3.A.1.105.9 |
| NULL(UNKNOWN) | HRGMv2_2117_13 | HRGMv2_2117_13_10 | 10936 | 13503 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2117_13 | HRGMv2_2117_13_11 | 13729 | 14691 | - | cobW | DUF1980_C |
| TC | HRGMv2_2117_13 | HRGMv2_2117_13_12 | 14705 | 15874 | - | 9.B.10.1.1 |
| TC | HRGMv2_2117_13 | HRGMv2_2117_13_13 | 16035 | 16952 | - | 1.A.23.2.1 |
| CAZyme | HRGMv2_2117_13 | HRGMv2_2117_13_14 | 16999 | 18906 | - | GH13_9 |
Gene ID: HRGMv2_2117_13_8
Type: TC
Location: 9075 - 9989 (-)
Type: TC
Location: 9075 - 9989 (-)
Gene ID: HRGMv2_2117_13_9
Type: TC
Location: 9967 - 10932 (-)
Type: TC
Location: 9967 - 10932 (-)
Gene ID: HRGMv2_2117_13_10
Type:
Location: 10936 - 13503 (-)
Type:
Location: 10936 - 13503 (-)
Gene ID: HRGMv2_2117_13_11
Type: pfam
Location: 13729 - 14691 (-)
Type: pfam
Location: 13729 - 14691 (-)
Gene ID: HRGMv2_2117_13_12
Type: TC
Location: 14705 - 15874 (-)
Type: TC
Location: 14705 - 15874 (-)
Gene ID: HRGMv2_2117_13_13
Type: TC
Location: 16035 - 16952 (-)
Type: TC
Location: 16035 - 16952 (-)
Gene ID: HRGMv2_2117_13_14
Type: CAZyme
Location: 16999 - 18906 (-)
Type: CAZyme
Location: 16999 - 18906 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.