Cluster: HRGMv2_2117_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_12 | HRGMv2_2117_12_17 | 15710 | 17413 | - | 8.A.7.1.1 |
| STP | HRGMv2_2117_12 | HRGMv2_2117_12_18 | 17552 | 17815 | - | PTS-HPr |
| TC | HRGMv2_2117_12 | HRGMv2_2117_12_19 | 17942 | 20008 | - | 4.A.2.1.20 |
| STP | HRGMv2_2117_12 | HRGMv2_2117_12_20 | 20112 | 21014 | - | PfkB |
| TF | HRGMv2_2117_12 | HRGMv2_2117_12_21 | 21014 | 21763 | - | HTH_DeoR |
| TC | HRGMv2_2117_12 | HRGMv2_2117_12_22 | 22186 | 23115 | - | 2.A.4.7.9 |
| CAZyme | HRGMv2_2117_12 | HRGMv2_2117_12_23 | 23700 | 26471 | - | GH3 |
Gene ID: HRGMv2_2117_12_17
Type: TC
Location: 15710 - 17413 (-)
Type: TC
Location: 15710 - 17413 (-)
Gene ID: HRGMv2_2117_12_18
Type: STP
Location: 17552 - 17815 (-)
Type: STP
Location: 17552 - 17815 (-)
Gene ID: HRGMv2_2117_12_19
Type: TC
Location: 17942 - 20008 (-)
Type: TC
Location: 17942 - 20008 (-)
Gene ID: HRGMv2_2117_12_20
Type: STP
Location: 20112 - 21014 (-)
Type: STP
Location: 20112 - 21014 (-)
Gene ID: HRGMv2_2117_12_21
Type: TF
Location: 21014 - 21763 (-)
Type: TF
Location: 21014 - 21763 (-)
Gene ID: HRGMv2_2117_12_22
Type: TC
Location: 22186 - 23115 (-)
Type: TC
Location: 22186 - 23115 (-)
Gene ID: HRGMv2_2117_12_23
Type: CAZyme
Location: 23700 - 26471 (-)
Type: CAZyme
Location: 23700 - 26471 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.