Cluster: HRGMv2_2117_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- CGC Family ID: CGCFAM_09344
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_4 | HRGMv2_2117_4_1 | 1 | 684 | + | 3.A.1.103.6 |
| TC | HRGMv2_2117_4 | HRGMv2_2117_4_2 | 696 | 2000 | + | 3.A.1.103.5 |
| CAZyme | HRGMv2_2117_4 | HRGMv2_2117_4_3 | 2077 | 3909 | + | GT2 |
| pfam | HRGMv2_2117_4 | HRGMv2_2117_4_4 | 4005 | 5105 | + | GLF | NAD_binding_8 |
| STP | HRGMv2_2117_4 | HRGMv2_2117_4_5 | 5284 | 9105 | + | EAL | GGDEF | Peripla_BP_3 |
| TC | HRGMv2_2117_4 | HRGMv2_2117_4_6 | 9218 | 10648 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_2117_4_1
Type: TC
Location: 1 - 684 (+)
Type: TC
Location: 1 - 684 (+)
Gene ID: HRGMv2_2117_4_2
Type: TC
Location: 696 - 2000 (+)
Type: TC
Location: 696 - 2000 (+)
Gene ID: HRGMv2_2117_4_3
Type: CAZyme
Location: 2077 - 3909 (+)
Type: CAZyme
Location: 2077 - 3909 (+)
Gene ID: HRGMv2_2117_4_4
Type: pfam
Location: 4005 - 5105 (+)
Type: pfam
Location: 4005 - 5105 (+)
Gene ID: HRGMv2_2117_4_5
Type: STP
Location: 5284 - 9105 (+)
Type: STP
Location: 5284 - 9105 (+)
Gene ID: HRGMv2_2117_4_6
Type: TC
Location: 9218 - 10648 (+)
Type: TC
Location: 9218 - 10648 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.