Cluster: HRGMv2_2117_CGC23
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_87 | HRGMv2_2117_87_4 | 3024 | 3971 | + | 3.A.1.105.7 |
| pfam | HRGMv2_2117_87 | HRGMv2_2117_87_5 | 4056 | 5252 | + | ABC2_membrane_3 |
| pfam | HRGMv2_2117_87 | HRGMv2_2117_87_6 | 5239 | 6399 | + | ABC2_membrane | ABC2_membrane_3 |
| CAZyme | HRGMv2_2117_87 | HRGMv2_2117_87_7 | 6594 | 8480 | + | GH13_36 |
Gene ID: HRGMv2_2117_87_4
Type: TC
Location: 3024 - 3971 (+)
Type: TC
Location: 3024 - 3971 (+)
Gene ID: HRGMv2_2117_87_5
Type: pfam
Location: 4056 - 5252 (+)
Type: pfam
Location: 4056 - 5252 (+)
Gene ID: HRGMv2_2117_87_6
Type: pfam
Location: 5239 - 6399 (+)
Type: pfam
Location: 5239 - 6399 (+)
Gene ID: HRGMv2_2117_87_7
Type: CAZyme
Location: 6594 - 8480 (+)
Type: CAZyme
Location: 6594 - 8480 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.