Cluster: HRGMv2_2117_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2117_79 | HRGMv2_2117_79_2 | 811 | 2481 | + | GH43_35 |
| TC | HRGMv2_2117_79 | HRGMv2_2117_79_3 | 2506 | 3834 | + | 2.A.35.1.5 |
| TC | HRGMv2_2117_79 | HRGMv2_2117_79_4 | 4000 | 5415 | + | 2.A.25.1.4 |
Gene ID: HRGMv2_2117_79_2
Type: CAZyme
Location: 811 - 2481 (+)
Type: CAZyme
Location: 811 - 2481 (+)
Gene ID: HRGMv2_2117_79_3
Type: TC
Location: 2506 - 3834 (+)
Type: TC
Location: 2506 - 3834 (+)
Gene ID: HRGMv2_2117_79_4
Type: TC
Location: 4000 - 5415 (+)
Type: TC
Location: 4000 - 5415 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2117_79_4 | vegan > omnivore | 1.36803 | 0.01614 |