Cluster: HRGMv2_2117_CGC21
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_78 | HRGMv2_2117_78_3 | 2066 | 3466 | + | 2.A.66.1.33 |
| TF | HRGMv2_2117_78 | HRGMv2_2117_78_4 | 3538 | 4389 | - | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2117_78 | HRGMv2_2117_78_5 | 4526 | 5467 | + | GH26 |
Gene ID: HRGMv2_2117_78_3
Type: TC
Location: 2066 - 3466 (+)
Type: TC
Location: 2066 - 3466 (+)
Gene ID: HRGMv2_2117_78_4
Type: TF
Location: 3538 - 4389 (-)
Type: TF
Location: 3538 - 4389 (-)
Gene ID: HRGMv2_2117_78_5
Type: CAZyme
Location: 4526 - 5467 (+)
Type: CAZyme
Location: 4526 - 5467 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2117_78_3 | vegetarian > omnivore | 1.03695 | 0.01285 |
| HRGMv2_2117_78_4 | vegetarian > omnivore | 1.01240 | 0.01285 |