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Cluster: HRGMv2_2117_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2117_3 HRGMv2_2117_3_5 4123 5793 - 1.C.39.4.6
NULL(UNKNOWN) HRGMv2_2117_3 HRGMv2_2117_3_6 6022 7029 - NULL(UNKNOWN)
[View Structural Homologs]
STP HRGMv2_2117_3 HRGMv2_2117_3_7 7108 8988 - Sigma70_r2 | Sigma70_r4_2
TC HRGMv2_2117_3 HRGMv2_2117_3_8 9242 12283 - 8.A.59.4.1
STP HRGMv2_2117_3 HRGMv2_2117_3_9 12615 13442 + PfkB
pfam HRGMv2_2117_3 HRGMv2_2117_3_10 13546 14205 + Radical_SAM
TC HRGMv2_2117_3 HRGMv2_2117_3_11 14244 15122 + 2.A.115.1.1
pfam HRGMv2_2117_3 HRGMv2_2117_3_12 15436 16788 - MatE | MatE | MurJ
TF HRGMv2_2117_3 HRGMv2_2117_3_13 16923 17402 - HTH_3
CAZyme HRGMv2_2117_3 HRGMv2_2117_3_14 17612 18739 - CBM35inCE17 | CE17
CAZyme HRGMv2_2117_3 HRGMv2_2117_3_15 18892 19938 - CE2
Gene ID: HRGMv2_2117_3_5
Type: TC
Location: 4123 - 5793 (-)
Gene ID: HRGMv2_2117_3_6
Type:
Location: 6022 - 7029 (-)
Gene ID: HRGMv2_2117_3_7
Type: STP
Location: 7108 - 8988 (-)
Gene ID: HRGMv2_2117_3_8
Type: TC
Location: 9242 - 12283 (-)
Gene ID: HRGMv2_2117_3_9
Type: STP
Location: 12615 - 13442 (+)
Gene ID: HRGMv2_2117_3_10
Type: pfam
Location: 13546 - 14205 (+)
Gene ID: HRGMv2_2117_3_11
Type: TC
Location: 14244 - 15122 (+)
Gene ID: HRGMv2_2117_3_12
Type: pfam
Location: 15436 - 16788 (-)
Gene ID: HRGMv2_2117_3_13
Type: TF
Location: 16923 - 17402 (-)
Gene ID: HRGMv2_2117_3_14
Type: CAZyme
Location: 17612 - 18739 (-)
Gene ID: HRGMv2_2117_3_15
Type: CAZyme
Location: 18892 - 19938 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2117_3_9 vegetarian > omnivore 1.16015 0.01285

🧭 Explore Read Mapping of CGC

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