Cluster: HRGMv2_2117_CGC12
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2117_29 | HRGMv2_2117_29_10 | 10352 | 11782 | - | 2.A.25.1.9 |
| pfam | HRGMv2_2117_29 | HRGMv2_2117_29_11 | 11968 | 14691 | - | FtsX | FtsX |
| TC | HRGMv2_2117_29 | HRGMv2_2117_29_12 | 14693 | 15394 | - | 3.A.1.134.11 |
| STP | HRGMv2_2117_29 | HRGMv2_2117_29_13 | 15640 | 16353 | - | TetR_N |
| STP | HRGMv2_2117_29 | HRGMv2_2117_29_14 | 16374 | 17645 | - | SBP_bac_1 |
| TC | HRGMv2_2117_29 | HRGMv2_2117_29_15 | 17667 | 19154 | - | 9.B.34.1.2 |
| pfam | HRGMv2_2117_29 | HRGMv2_2117_29_16 | 19215 | 19673 | - | PTPS |
| NULL(UNKNOWN) | HRGMv2_2117_29 | HRGMv2_2117_29_17 | 19670 | 20740 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2117_29 | HRGMv2_2117_29_18 | 20724 | 22109 | - | GT2 |
Gene ID: HRGMv2_2117_29_10
Type: TC
Location: 10352 - 11782 (-)
Type: TC
Location: 10352 - 11782 (-)
Gene ID: HRGMv2_2117_29_11
Type: pfam
Location: 11968 - 14691 (-)
Type: pfam
Location: 11968 - 14691 (-)
Gene ID: HRGMv2_2117_29_12
Type: TC
Location: 14693 - 15394 (-)
Type: TC
Location: 14693 - 15394 (-)
Gene ID: HRGMv2_2117_29_13
Type: STP
Location: 15640 - 16353 (-)
Type: STP
Location: 15640 - 16353 (-)
Gene ID: HRGMv2_2117_29_14
Type: STP
Location: 16374 - 17645 (-)
Type: STP
Location: 16374 - 17645 (-)
Gene ID: HRGMv2_2117_29_15
Type: TC
Location: 17667 - 19154 (-)
Type: TC
Location: 17667 - 19154 (-)
Gene ID: HRGMv2_2117_29_16
Type: pfam
Location: 19215 - 19673 (-)
Type: pfam
Location: 19215 - 19673 (-)
Gene ID: HRGMv2_2117_29_17
Type:
Location: 19670 - 20740 (-)
Type:
Location: 19670 - 20740 (-)
Gene ID: HRGMv2_2117_29_18
Type: CAZyme
Location: 20724 - 22109 (-)
Type: CAZyme
Location: 20724 - 22109 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2117_29_11 | vegetarian > omnivore | 1.02325 | 0.01285 |
| HRGMv2_2117_29_11 | vegetarian > vegan | 1.25933 | 0.00855 |
| HRGMv2_2117_29_12 | vegetarian > omnivore | 1.09699 | 0.01285 |