Cluster: HRGMv2_2117_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2117
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2117_18 | HRGMv2_2117_18_25 | 27486 | 28511 | - | GH130_2 |
| CAZyme | HRGMv2_2117_18 | HRGMv2_2117_18_26 | 28641 | 29819 | - | GH130_1 |
| pfam | HRGMv2_2117_18 | HRGMv2_2117_18_27 | 29862 | 31031 | - | GlcNAc_2-epim | Beta-AFase-like_GH127_cat |
| TC | HRGMv2_2117_18 | HRGMv2_2117_18_28 | 31062 | 31946 | - | 3.A.1.1.47 |
| TC | HRGMv2_2117_18 | HRGMv2_2117_18_29 | 31948 | 32973 | - | 3.A.1.1.34 |
Gene ID: HRGMv2_2117_18_25
Type: CAZyme
Location: 27486 - 28511 (-)
Type: CAZyme
Location: 27486 - 28511 (-)
Gene ID: HRGMv2_2117_18_26
Type: CAZyme
Location: 28641 - 29819 (-)
Type: CAZyme
Location: 28641 - 29819 (-)
Gene ID: HRGMv2_2117_18_27
Type: pfam
Location: 29862 - 31031 (-)
Type: pfam
Location: 29862 - 31031 (-)
Gene ID: HRGMv2_2117_18_28
Type: TC
Location: 31062 - 31946 (-)
Type: TC
Location: 31062 - 31946 (-)
Gene ID: HRGMv2_2117_18_29
Type: TC
Location: 31948 - 32973 (-)
Type: TC
Location: 31948 - 32973 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Species
Coprococcus sp900557435
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2117_18_25 | vegetarian > vegan | 1.05173 | 0.00855 |
| HRGMv2_2117_18_28 | vegetarian > vegan | 1.35527 | 0.00855 |