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Cluster: HRGMv2_2117_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2117_1 HRGMv2_2117_1_32 35144 37468 - GH36
CAZyme HRGMv2_2117_1 HRGMv2_2117_1_33 37915 39582 - GH13_31
TC HRGMv2_2117_1 HRGMv2_2117_1_34 39736 40572 - 3.A.1.1.45
TC HRGMv2_2117_1 HRGMv2_2117_1_35 40572 41468 - 3.A.1.1.45
TC HRGMv2_2117_1 HRGMv2_2117_1_36 41576 43054 - 3.A.1.1.45
TF HRGMv2_2117_1 HRGMv2_2117_1_37 43929 44960 - LacI
STP HRGMv2_2117_1 HRGMv2_2117_1_38 45454 46944 - AAA
TC HRGMv2_2117_1 HRGMv2_2117_1_39 47014 48543 - 2.A.66.1.32
Gene ID: HRGMv2_2117_1_32
Type: CAZyme
Location: 35144 - 37468 (-)
Gene ID: HRGMv2_2117_1_33
Type: CAZyme
Location: 37915 - 39582 (-)
Gene ID: HRGMv2_2117_1_34
Type: TC
Location: 39736 - 40572 (-)
Gene ID: HRGMv2_2117_1_35
Type: TC
Location: 40572 - 41468 (-)
Gene ID: HRGMv2_2117_1_36
Type: TC
Location: 41576 - 43054 (-)
Gene ID: HRGMv2_2117_1_37
Type: TF
Location: 43929 - 44960 (-)
Gene ID: HRGMv2_2117_1_38
Type: STP
Location: 45454 - 46944 (-)
Gene ID: HRGMv2_2117_1_39
Type: TC
Location: 47014 - 48543 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2117_1_34 vegetarian > vegan 1.21017 0.00855
HRGMv2_2117_1_36 vegetarian > vegan 1.03422 0.00855

🧭 Explore Read Mapping of CGC

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