Cluster: HRGMv2_2109_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_00237
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_32 | HRGMv2_2109_32_2 | 670 | 2658 | - | GH31_1 |
| TF | HRGMv2_2109_32 | HRGMv2_2109_32_3 | 2926 | 3474 | - | HTH_11 |
| pfam | HRGMv2_2109_32 | HRGMv2_2109_32_4 | 3573 | 4427 | - | QRPTase_C | QRPTase_N |
| TC | HRGMv2_2109_32 | HRGMv2_2109_32_5 | 4450 | 5751 | - | 3.D.10.1.4 |
Gene ID: HRGMv2_2109_32_2
Type: CAZyme
Location: 670 - 2658 (-)
Type: CAZyme
Location: 670 - 2658 (-)
Gene ID: HRGMv2_2109_32_3
Type: TF
Location: 2926 - 3474 (-)
Type: TF
Location: 2926 - 3474 (-)
Gene ID: HRGMv2_2109_32_4
Type: pfam
Location: 3573 - 4427 (-)
Type: pfam
Location: 3573 - 4427 (-)
Gene ID: HRGMv2_2109_32_5
Type: TC
Location: 4450 - 5751 (-)
Type: TC
Location: 4450 - 5751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.