Cluster: HRGMv2_2109_CGC8
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_29 | HRGMv2_2109_29_9 | 10285 | 12198 | + | GH13_9 |
| TC | HRGMv2_2109_29 | HRGMv2_2109_29_10 | 12203 | 13138 | + | 1.A.23.2.2 |
| TC | HRGMv2_2109_29 | HRGMv2_2109_29_11 | 13232 | 14377 | + | 9.B.10.1.1 |
| pfam | HRGMv2_2109_29 | HRGMv2_2109_29_12 | 14387 | 15349 | + | cobW | DUF1980_C |
| peptidase | HRGMv2_2109_29 | HRGMv2_2109_29_13 | 15504 | 17087 | + | S16.UNW |
| TC | HRGMv2_2109_29 | HRGMv2_2109_29_14 | 17077 | 18177 | + | 3.A.11.1.3 |
Gene ID: HRGMv2_2109_29_9
Type: CAZyme
Location: 10285 - 12198 (+)
Type: CAZyme
Location: 10285 - 12198 (+)
Gene ID: HRGMv2_2109_29_10
Type: TC
Location: 12203 - 13138 (+)
Type: TC
Location: 12203 - 13138 (+)
Gene ID: HRGMv2_2109_29_11
Type: TC
Location: 13232 - 14377 (+)
Type: TC
Location: 13232 - 14377 (+)
Gene ID: HRGMv2_2109_29_12
Type: pfam
Location: 14387 - 15349 (+)
Type: pfam
Location: 14387 - 15349 (+)
Gene ID: HRGMv2_2109_29_13
Type: peptidase
Location: 15504 - 17087 (+)
Type: peptidase
Location: 15504 - 17087 (+)
Gene ID: HRGMv2_2109_29_14
Type: TC
Location: 17077 - 18177 (+)
Type: TC
Location: 17077 - 18177 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.