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Cluster: HRGMv2_2109_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2109_18 HRGMv2_2109_18_2 1280 2911 - 3.A.1.121.4
NULL(UNKNOWN) HRGMv2_2109_18 HRGMv2_2109_18_3 3080 3268 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2109_18 HRGMv2_2109_18_4 3538 4830 + 9.A.40.2.4
TF HRGMv2_2109_18 HRGMv2_2109_18_5 5066 5824 + 0042546
CAZyme HRGMv2_2109_18 HRGMv2_2109_18_6 6076 7173 - GH53
CAZyme HRGMv2_2109_18 HRGMv2_2109_18_7 7320 9353 - GH42
NULL(UNKNOWN) HRGMv2_2109_18 HRGMv2_2109_18_8 9479 9697 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) HRGMv2_2109_18 HRGMv2_2109_18_9 9670 11511 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2109_18 HRGMv2_2109_18_10 11536 12381 - 3.A.1.1.27
TC HRGMv2_2109_18 HRGMv2_2109_18_11 12378 13802 - 3.A.1.1.27
Gene ID: HRGMv2_2109_18_2
Type: TC
Location: 1280 - 2911 (-)
Gene ID: HRGMv2_2109_18_3
Type:
Location: 3080 - 3268 (-)
Gene ID: HRGMv2_2109_18_4
Type: TC
Location: 3538 - 4830 (+)
Gene ID: HRGMv2_2109_18_5
Type: TF
Location: 5066 - 5824 (+)
Gene ID: HRGMv2_2109_18_6
Type: CAZyme
Location: 6076 - 7173 (-)
Gene ID: HRGMv2_2109_18_7
Type: CAZyme
Location: 7320 - 9353 (-)
Gene ID: HRGMv2_2109_18_8
Type:
Location: 9479 - 9697 (-)
Gene ID: HRGMv2_2109_18_9
Type:
Location: 9670 - 11511 (-)
Gene ID: HRGMv2_2109_18_10
Type: TC
Location: 11536 - 12381 (-)
Gene ID: HRGMv2_2109_18_11
Type: TC
Location: 12378 - 13802 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Coprococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2109_18_3 vegetarian > omnivore 1.73757 0.03476

🧭 Explore Read Mapping of CGC

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