Cluster: HRGMv2_2109_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2109_4 | HRGMv2_2109_4_20 | 26888 | 28639 | - | 2.A.21.9.2 |
| pfam | HRGMv2_2109_4 | HRGMv2_2109_4_21 | 28942 | 32133 | - | GtrA_DPMS_TM | YfhO |
| CAZyme | HRGMv2_2109_4 | HRGMv2_2109_4_22 | 32211 | 34520 | - | CBM4 | GH9 |
| pfam | HRGMv2_2109_4 | HRGMv2_2109_4_23 | 34644 | 35420 | - | His_biosynth |
| TC | HRGMv2_2109_4 | HRGMv2_2109_4_24 | 35623 | 36345 | - | 3.A.11.1.4 |
| TC | HRGMv2_2109_4 | HRGMv2_2109_4_25 | 36428 | 38677 | - | 3.A.7.16.1 |
| TC | HRGMv2_2109_4 | HRGMv2_2109_4_26 | 38693 | 39685 | - | 9.B.157.1.1 |
Gene ID: HRGMv2_2109_4_20
Type: TC
Location: 26888 - 28639 (-)
Type: TC
Location: 26888 - 28639 (-)
Gene ID: HRGMv2_2109_4_21
Type: pfam
Location: 28942 - 32133 (-)
Type: pfam
Location: 28942 - 32133 (-)
Gene ID: HRGMv2_2109_4_22
Type: CAZyme
Location: 32211 - 34520 (-)
Type: CAZyme
Location: 32211 - 34520 (-)
Gene ID: HRGMv2_2109_4_23
Type: pfam
Location: 34644 - 35420 (-)
Type: pfam
Location: 34644 - 35420 (-)
Gene ID: HRGMv2_2109_4_24
Type: TC
Location: 35623 - 36345 (-)
Type: TC
Location: 35623 - 36345 (-)
Gene ID: HRGMv2_2109_4_25
Type: TC
Location: 36428 - 38677 (-)
Type: TC
Location: 36428 - 38677 (-)
Gene ID: HRGMv2_2109_4_26
Type: TC
Location: 38693 - 39685 (-)
Type: TC
Location: 38693 - 39685 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2109_4_24 | vegetarian > omnivore | 1.12224 | 0.03476 |