Cluster: HRGMv2_2109_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_05739
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_3 | HRGMv2_2109_3_42 | 39840 | 42878 | - | GH2 |
| TF | HRGMv2_2109_3 | HRGMv2_2109_3_43 | 43097 | 43966 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_2109_3 | HRGMv2_2109_3_44 | 43959 | 44627 | - | Hydrolase | Hydrolase_like | HAD_2 |
| TC | HRGMv2_2109_3 | HRGMv2_2109_3_45 | 44800 | 47043 | - | 2.A.6.4.2 |
Gene ID: HRGMv2_2109_3_42
Type: CAZyme
Location: 39840 - 42878 (-)
Type: CAZyme
Location: 39840 - 42878 (-)
Gene ID: HRGMv2_2109_3_43
Type: TF
Location: 43097 - 43966 (+)
Type: TF
Location: 43097 - 43966 (+)
Gene ID: HRGMv2_2109_3_44
Type: pfam
Location: 43959 - 44627 (-)
Type: pfam
Location: 43959 - 44627 (-)
Gene ID: HRGMv2_2109_3_45
Type: TC
Location: 44800 - 47043 (-)
Type: TC
Location: 44800 - 47043 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2109_3_44 | vegetarian > omnivore | 1.16177 | 0.03476 |