Cluster: HRGMv2_2109_CGC16
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_04037
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2109_137 | HRGMv2_2109_137_3 | 1808 | 2530 | + | 3.A.1.148.3 |
| NULL(UNKNOWN) | HRGMv2_2109_137 | HRGMv2_2109_137_4 | 2593 | 4779 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2109_137 | HRGMv2_2109_137_5 | 4890 | 5951 | - | GH109 |
Gene ID: HRGMv2_2109_137_3
Type: TC
Location: 1808 - 2530 (+)
Type: TC
Location: 1808 - 2530 (+)
Gene ID: HRGMv2_2109_137_4
Type:
Location: 2593 - 4779 (+)
Type:
Location: 2593 - 4779 (+)
Gene ID: HRGMv2_2109_137_5
Type: CAZyme
Location: 4890 - 5951 (-)
Type: CAZyme
Location: 4890 - 5951 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.