Cluster: HRGMv2_2109_CGC15
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_97 | HRGMv2_2109_97_7 | 5004 | 6035 | - | GH5_37 |
| TF | HRGMv2_2109_97 | HRGMv2_2109_97_8 | 6267 | 7010 | + | HTH_AraC | HTH_AraC |
| pfam | HRGMv2_2109_97 | HRGMv2_2109_97_9 | 7007 | 7267 | - | Alpha-amylase |
| TC | HRGMv2_2109_97 | HRGMv2_2109_97_10 | 7228 | 7950 | - | 4.A.6.1.19 |
| TC | HRGMv2_2109_97 | HRGMv2_2109_97_11 | 8263 | 8574 | - | 2.A.78.1.1 |
Gene ID: HRGMv2_2109_97_7
Type: CAZyme
Location: 5004 - 6035 (-)
Type: CAZyme
Location: 5004 - 6035 (-)
Gene ID: HRGMv2_2109_97_8
Type: TF
Location: 6267 - 7010 (+)
Type: TF
Location: 6267 - 7010 (+)
Gene ID: HRGMv2_2109_97_9
Type: pfam
Location: 7007 - 7267 (-)
Type: pfam
Location: 7007 - 7267 (-)
Gene ID: HRGMv2_2109_97_10
Type: TC
Location: 7228 - 7950 (-)
Type: TC
Location: 7228 - 7950 (-)
Gene ID: HRGMv2_2109_97_11
Type: TC
Location: 8263 - 8574 (-)
Type: TC
Location: 8263 - 8574 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.