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Cluster: HRGMv2_2109_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2109_68 HRGMv2_2109_68_3 2248 2973 + 3.A.1.25.6
pfam HRGMv2_2109_68 HRGMv2_2109_68_4 2992 3909 + SUFBD_core
pfam HRGMv2_2109_68 HRGMv2_2109_68_5 4015 4887 + SAICAR_synt
CAZyme HRGMv2_2109_68 HRGMv2_2109_68_6 5225 6922 - CE4
TC HRGMv2_2109_68 HRGMv2_2109_68_7 7302 8618 + 2.A.66.1.22
TC HRGMv2_2109_68 HRGMv2_2109_68_8 8821 10218 + 2.A.22.5.3
TC HRGMv2_2109_68 HRGMv2_2109_68_9 10509 11291 + 2.A.5.5.2
Gene ID: HRGMv2_2109_68_3
Type: TC
Location: 2248 - 2973 (+)
Gene ID: HRGMv2_2109_68_4
Type: pfam
Location: 2992 - 3909 (+)
Gene ID: HRGMv2_2109_68_5
Type: pfam
Location: 4015 - 4887 (+)
Gene ID: HRGMv2_2109_68_6
Type: CAZyme
Location: 5225 - 6922 (-)
Gene ID: HRGMv2_2109_68_7
Type: TC
Location: 7302 - 8618 (+)
Gene ID: HRGMv2_2109_68_8
Type: TC
Location: 8821 - 10218 (+)
Gene ID: HRGMv2_2109_68_9
Type: TC
Location: 10509 - 11291 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Coprococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2109_68_7 vegetarian > omnivore 1.08664 0.03476

🧭 Explore Read Mapping of CGC

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