Cluster: HRGMv2_2109_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_05012
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_59 | HRGMv2_2109_59_5 | 2638 | 3783 | - | GH3 |
| pfam | HRGMv2_2109_59 | HRGMv2_2109_59_6 | 3776 | 4513 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| TC | HRGMv2_2109_59 | HRGMv2_2109_59_7 | 4529 | 5329 | - | 3.A.1.25.6 |
| TC | HRGMv2_2109_59 | HRGMv2_2109_59_8 | 5492 | 7339 | - | 3.A.1.30.1 |
Gene ID: HRGMv2_2109_59_5
Type: CAZyme
Location: 2638 - 3783 (-)
Type: CAZyme
Location: 2638 - 3783 (-)
Gene ID: HRGMv2_2109_59_6
Type: pfam
Location: 3776 - 4513 (-)
Type: pfam
Location: 3776 - 4513 (-)
Gene ID: HRGMv2_2109_59_7
Type: TC
Location: 4529 - 5329 (-)
Type: TC
Location: 4529 - 5329 (-)
Gene ID: HRGMv2_2109_59_8
Type: TC
Location: 5492 - 7339 (-)
Type: TC
Location: 5492 - 7339 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.