Cluster: HRGMv2_2109_CGC11
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_06738
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_2 | 451 | 1659 | - | GT4 |
| pfam | HRGMv2_2109_45 | HRGMv2_2109_45_3 | 1699 | 2898 | - | Wzy_C |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_4 | 2934 | 3974 | - | GT2 |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_5 | 3987 | 5000 | - | GT32 |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_6 | 5009 | 6127 | - | GT4 |
| pfam | HRGMv2_2109_45 | HRGMv2_2109_45_7 | 6124 | 6972 | - | LicD |
| pfam | HRGMv2_2109_45 | HRGMv2_2109_45_8 | 6989 | 7456 | - | CTP_transf_like |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_9 | 7622 | 8743 | - | GT4 |
| TC | HRGMv2_2109_45 | HRGMv2_2109_45_10 | 8797 | 10263 | - | 9.B.18.1.2 |
| pfam | HRGMv2_2109_45 | HRGMv2_2109_45_11 | 10491 | 11717 | - | UDPGP |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_12 | 11973 | 12716 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_2109_45 | HRGMv2_2109_45_13 | 12743 | 12934 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2109_45 | HRGMv2_2109_45_14 | 12958 | 13701 | - | GT2 |
| TC | HRGMv2_2109_45 | HRGMv2_2109_45_15 | 13702 | 15195 | - | 9.B.18.1.3 |
Gene ID: HRGMv2_2109_45_2
Type: CAZyme
Location: 451 - 1659 (-)
Type: CAZyme
Location: 451 - 1659 (-)
Gene ID: HRGMv2_2109_45_3
Type: pfam
Location: 1699 - 2898 (-)
Type: pfam
Location: 1699 - 2898 (-)
Gene ID: HRGMv2_2109_45_4
Type: CAZyme
Location: 2934 - 3974 (-)
Type: CAZyme
Location: 2934 - 3974 (-)
Gene ID: HRGMv2_2109_45_5
Type: CAZyme
Location: 3987 - 5000 (-)
Type: CAZyme
Location: 3987 - 5000 (-)
Gene ID: HRGMv2_2109_45_6
Type: CAZyme
Location: 5009 - 6127 (-)
Type: CAZyme
Location: 5009 - 6127 (-)
Gene ID: HRGMv2_2109_45_7
Type: pfam
Location: 6124 - 6972 (-)
Type: pfam
Location: 6124 - 6972 (-)
Gene ID: HRGMv2_2109_45_8
Type: pfam
Location: 6989 - 7456 (-)
Type: pfam
Location: 6989 - 7456 (-)
Gene ID: HRGMv2_2109_45_9
Type: CAZyme
Location: 7622 - 8743 (-)
Type: CAZyme
Location: 7622 - 8743 (-)
Gene ID: HRGMv2_2109_45_10
Type: TC
Location: 8797 - 10263 (-)
Type: TC
Location: 8797 - 10263 (-)
Gene ID: HRGMv2_2109_45_11
Type: pfam
Location: 10491 - 11717 (-)
Type: pfam
Location: 10491 - 11717 (-)
Gene ID: HRGMv2_2109_45_12
Type: CAZyme
Location: 11973 - 12716 (-)
Type: CAZyme
Location: 11973 - 12716 (-)
Gene ID: HRGMv2_2109_45_13
Type:
Location: 12743 - 12934 (-)
Type:
Location: 12743 - 12934 (-)
Gene ID: HRGMv2_2109_45_14
Type: CAZyme
Location: 12958 - 13701 (-)
Type: CAZyme
Location: 12958 - 13701 (-)
Gene ID: HRGMv2_2109_45_15
Type: TC
Location: 13702 - 15195 (-)
Type: TC
Location: 13702 - 15195 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2109_45_11 | vegetarian > omnivore | 1.14506 | 0.03476 |
| HRGMv2_2109_45_13 | vegetarian > omnivore | 1.12120 | 0.03476 |
| HRGMv2_2109_45_14 | vegetarian > omnivore | 1.09127 | 0.03476 |