Cluster: HRGMv2_2109_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_00414
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2109_33 | HRGMv2_2109_33_9 | 8581 | 10281 | - | 3.A.1.1.9 |
| TC | HRGMv2_2109_33 | HRGMv2_2109_33_10 | 10332 | 11207 | - | 3.A.1.1.27 |
| TC | HRGMv2_2109_33 | HRGMv2_2109_33_11 | 11207 | 12592 | - | 3.A.1.1.27 |
| STP | HRGMv2_2109_33 | HRGMv2_2109_33_12 | 12705 | 14012 | - | SBP_bac_1 |
| TC | HRGMv2_2109_33 | HRGMv2_2109_33_13 | 14215 | 15945 | - | 9.B.33.1.1 |
| TF | HRGMv2_2109_33 | HRGMv2_2109_33_14 | 15938 | 17455 | - | HTH_AraC |
| CAZyme | HRGMv2_2109_33 | HRGMv2_2109_33_15 | 17507 | 21274 | - | GH77 | GT35 |
Gene ID: HRGMv2_2109_33_9
Type: TC
Location: 8581 - 10281 (-)
Type: TC
Location: 8581 - 10281 (-)
Gene ID: HRGMv2_2109_33_10
Type: TC
Location: 10332 - 11207 (-)
Type: TC
Location: 10332 - 11207 (-)
Gene ID: HRGMv2_2109_33_11
Type: TC
Location: 11207 - 12592 (-)
Type: TC
Location: 11207 - 12592 (-)
Gene ID: HRGMv2_2109_33_12
Type: STP
Location: 12705 - 14012 (-)
Type: STP
Location: 12705 - 14012 (-)
Gene ID: HRGMv2_2109_33_13
Type: TC
Location: 14215 - 15945 (-)
Type: TC
Location: 14215 - 15945 (-)
Gene ID: HRGMv2_2109_33_14
Type: TF
Location: 15938 - 17455 (-)
Type: TF
Location: 15938 - 17455 (-)
Gene ID: HRGMv2_2109_33_15
Type: CAZyme
Location: 17507 - 21274 (-)
Type: CAZyme
Location: 17507 - 21274 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2109_33_14 | vegetarian > omnivore | 1.14520 | 0.03476 |