Cluster: HRGMv2_2109_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2109
- CGC Family ID: CGCFAM_04038
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2109_2 | HRGMv2_2109_2_11 | 14786 | 17566 | - | GH3 |
| pfam | HRGMv2_2109_2 | HRGMv2_2109_2_12 | 17844 | 20186 | - | Metallophos | Pur_ac_phosph_N |
| NULL(UNKNOWN) | HRGMv2_2109_2 | HRGMv2_2109_2_13 | 20288 | 20605 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2109_2 | HRGMv2_2109_2_14 | 20633 | 21841 | - | 9.B.141.1.1 |
Gene ID: HRGMv2_2109_2_11
Type: CAZyme
Location: 14786 - 17566 (-)
Type: CAZyme
Location: 14786 - 17566 (-)
Gene ID: HRGMv2_2109_2_12
Type: pfam
Location: 17844 - 20186 (-)
Type: pfam
Location: 17844 - 20186 (-)
Gene ID: HRGMv2_2109_2_13
Type:
Location: 20288 - 20605 (-)
Type:
Location: 20288 - 20605 (-)
Gene ID: HRGMv2_2109_2_14
Type: TC
Location: 20633 - 21841 (-)
Type: TC
Location: 20633 - 21841 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Coprococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.