Cluster: HRGMv2_2099_CGC9
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2099
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_19 | HRGMv2_2099_19_17 | 19629 | 20522 | + | 3.A.1.1.4 |
| TC | HRGMv2_2099_19 | HRGMv2_2099_19_18 | 20515 | 21345 | + | 3.A.1.1.4 |
| CAZyme | HRGMv2_2099_19 | HRGMv2_2099_19_19 | 21408 | 24473 | + | GH2 |
| CAZyme | HRGMv2_2099_19 | HRGMv2_2099_19_20 | 24537 | 26561 | + | GH42 |
Gene ID: HRGMv2_2099_19_17
Type: TC
Location: 19629 - 20522 (+)
Type: TC
Location: 19629 - 20522 (+)
Gene ID: HRGMv2_2099_19_18
Type: TC
Location: 20515 - 21345 (+)
Type: TC
Location: 20515 - 21345 (+)
Gene ID: HRGMv2_2099_19_19
Type: CAZyme
Location: 21408 - 24473 (+)
Type: CAZyme
Location: 21408 - 24473 (+)
Gene ID: HRGMv2_2099_19_20
Type: CAZyme
Location: 24537 - 26561 (+)
Type: CAZyme
Location: 24537 - 26561 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_19_17 | vegan > omnivore | 1.40319 | 0.00732 |
| HRGMv2_2099_19_18 | vegan > omnivore | 1.27394 | 0.00732 |