Cluster: HRGMv2_2099_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2099
- CGC Family ID: CGCFAM_03055
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_17 | HRGMv2_2099_17_15 | 17031 | 18053 | + | 3.A.1.2.6 |
| CAZyme | HRGMv2_2099_17 | HRGMv2_2099_17_16 | 18066 | 19763 | + | GH13_11 |
| pfam | HRGMv2_2099_17 | HRGMv2_2099_17_17 | 19782 | 20330 | + | DUF5662 |
| pfam | HRGMv2_2099_17 | HRGMv2_2099_17_18 | 20350 | 20997 | + | His_Phos_1 |
| TC | HRGMv2_2099_17 | HRGMv2_2099_17_19 | 21081 | 22718 | - | 3.A.1.121.4 |
Gene ID: HRGMv2_2099_17_15
Type: TC
Location: 17031 - 18053 (+)
Type: TC
Location: 17031 - 18053 (+)
Gene ID: HRGMv2_2099_17_16
Type: CAZyme
Location: 18066 - 19763 (+)
Type: CAZyme
Location: 18066 - 19763 (+)
Gene ID: HRGMv2_2099_17_17
Type: pfam
Location: 19782 - 20330 (+)
Type: pfam
Location: 19782 - 20330 (+)
Gene ID: HRGMv2_2099_17_18
Type: pfam
Location: 20350 - 20997 (+)
Type: pfam
Location: 20350 - 20997 (+)
Gene ID: HRGMv2_2099_17_19
Type: TC
Location: 21081 - 22718 (-)
Type: TC
Location: 21081 - 22718 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.