Cluster: HRGMv2_2099_CGC32
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2099
- CGC Family ID: CGCFAM_00002
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_152 | HRGMv2_2099_152_1 | 787 | 1476 | + | 9.B.18.1.2 |
| CAZyme | HRGMv2_2099_152 | HRGMv2_2099_152_2 | 1505 | 2614 | + | GT4 |
| CAZyme | HRGMv2_2099_152 | HRGMv2_2099_152_3 | 2596 | 3393 | + | GT2 |
| NULL(UNKNOWN) | HRGMv2_2099_152 | HRGMv2_2099_152_4 | 3415 | 3621 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2099_152 | HRGMv2_2099_152_5 | 3929 | 5056 | + | EpsG |
| CAZyme | HRGMv2_2099_152 | HRGMv2_2099_152_6 | 5086 | 6069 | + | GT2 |
| TC | HRGMv2_2099_152 | HRGMv2_2099_152_7 | 6066 | 6422 | + | 2.A.66.2.16 |
Gene ID: HRGMv2_2099_152_1
Type: TC
Location: 787 - 1476 (+)
Type: TC
Location: 787 - 1476 (+)
Gene ID: HRGMv2_2099_152_2
Type: CAZyme
Location: 1505 - 2614 (+)
Type: CAZyme
Location: 1505 - 2614 (+)
Gene ID: HRGMv2_2099_152_3
Type: CAZyme
Location: 2596 - 3393 (+)
Type: CAZyme
Location: 2596 - 3393 (+)
Gene ID: HRGMv2_2099_152_4
Type:
Location: 3415 - 3621 (+)
Type:
Location: 3415 - 3621 (+)
Gene ID: HRGMv2_2099_152_5
Type: pfam
Location: 3929 - 5056 (+)
Type: pfam
Location: 3929 - 5056 (+)
Gene ID: HRGMv2_2099_152_6
Type: CAZyme
Location: 5086 - 6069 (+)
Type: CAZyme
Location: 5086 - 6069 (+)
Gene ID: HRGMv2_2099_152_7
Type: TC
Location: 6066 - 6422 (+)
Type: TC
Location: 6066 - 6422 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_152_1 | vegan > omnivore | 3.39388 | 0.00732 |