Cluster: HRGMv2_2099_CGC28
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2099
- CGC Family ID: CGCFAM_01202
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2099_123 | HRGMv2_2099_123_2 | 1429 | 3000 | - | GH78 |
| CAZyme | HRGMv2_2099_123 | HRGMv2_2099_123_3 | 3093 | 4499 | - | GH1 |
| pfam | HRGMv2_2099_123 | HRGMv2_2099_123_4 | 4502 | 5428 | - | ROK |
| pfam | HRGMv2_2099_123 | HRGMv2_2099_123_5 | 5531 | 6457 | - | IU_nuc_hydro | Sde182_NH-like |
| TC | HRGMv2_2099_123 | HRGMv2_2099_123_6 | 6598 | 8031 | - | 2.A.2.3.1 |
Gene ID: HRGMv2_2099_123_2
Type: CAZyme
Location: 1429 - 3000 (-)
Type: CAZyme
Location: 1429 - 3000 (-)
Gene ID: HRGMv2_2099_123_3
Type: CAZyme
Location: 3093 - 4499 (-)
Type: CAZyme
Location: 3093 - 4499 (-)
Gene ID: HRGMv2_2099_123_4
Type: pfam
Location: 4502 - 5428 (-)
Type: pfam
Location: 4502 - 5428 (-)
Gene ID: HRGMv2_2099_123_5
Type: pfam
Location: 5531 - 6457 (-)
Type: pfam
Location: 5531 - 6457 (-)
Gene ID: HRGMv2_2099_123_6
Type: TC
Location: 6598 - 8031 (-)
Type: TC
Location: 6598 - 8031 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_123_5 | vegan > omnivore | 2.93992 | 0.00732 |