Cluster: HRGMv2_2099_CGC27
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2099
- CGC Family ID: CGCFAM_06662
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_121 | HRGMv2_2099_121_2 | 1021 | 2373 | + | 2.A.66.1.28 |
| TF | HRGMv2_2099_121 | HRGMv2_2099_121_3 | 2480 | 3520 | + | HTH_AraC | HTH_AraC |
| CAZyme | HRGMv2_2099_121 | HRGMv2_2099_121_4 | 3684 | 6335 | + | GH106 |
| CAZyme | HRGMv2_2099_121 | HRGMv2_2099_121_5 | 6449 | 8473 | + | GH39 |
Gene ID: HRGMv2_2099_121_2
Type: TC
Location: 1021 - 2373 (+)
Type: TC
Location: 1021 - 2373 (+)
Gene ID: HRGMv2_2099_121_3
Type: TF
Location: 2480 - 3520 (+)
Type: TF
Location: 2480 - 3520 (+)
Gene ID: HRGMv2_2099_121_4
Type: CAZyme
Location: 3684 - 6335 (+)
Type: CAZyme
Location: 3684 - 6335 (+)
Gene ID: HRGMv2_2099_121_5
Type: CAZyme
Location: 6449 - 8473 (+)
Type: CAZyme
Location: 6449 - 8473 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_121_2 | vegan > omnivore | 15.64666 | 0.00732 |
| HRGMv2_2099_121_2 | vegetarian > omnivore | 14.54067 | 0.00000 |