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Cluster: HRGMv2_2099_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2099_77 HRGMv2_2099_77_2 990 2936 + 3.A.2.3.3
TC HRGMv2_2099_77 HRGMv2_2099_77_3 2964 3398 + 3.A.2.2.1
pfam HRGMv2_2099_77 HRGMv2_2099_77_4 3451 3759 + ATP-synt_F
pfam HRGMv2_2099_77 HRGMv2_2099_77_5 3772 4359 + vATP-synt_E
TC HRGMv2_2099_77 HRGMv2_2099_77_6 4319 6118 + 3.A.2.3.2
TC HRGMv2_2099_77 HRGMv2_2099_77_7 6134 7525 + 3.A.2.3.3
TC HRGMv2_2099_77 HRGMv2_2099_77_8 7582 8205 + 3.A.2.3.2
CAZyme HRGMv2_2099_77 HRGMv2_2099_77_9 8255 10237 - CBM48 | GH13_9
Gene ID: HRGMv2_2099_77_2
Type: TC
Location: 990 - 2936 (+)
Gene ID: HRGMv2_2099_77_3
Type: TC
Location: 2964 - 3398 (+)
Gene ID: HRGMv2_2099_77_4
Type: pfam
Location: 3451 - 3759 (+)
Gene ID: HRGMv2_2099_77_5
Type: pfam
Location: 3772 - 4359 (+)
Gene ID: HRGMv2_2099_77_6
Type: TC
Location: 4319 - 6118 (+)
Gene ID: HRGMv2_2099_77_7
Type: TC
Location: 6134 - 7525 (+)
Gene ID: HRGMv2_2099_77_8
Type: TC
Location: 7582 - 8205 (+)
Gene ID: HRGMv2_2099_77_9
Type: CAZyme
Location: 8255 - 10237 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2099_77_2 vegan > omnivore 1.56055 0.00732
HRGMv2_2099_77_5 vegan > omnivore 4.51311 0.00732
HRGMv2_2099_77_5 vegetarian > omnivore 3.98426 0.00000

🧭 Explore Read Mapping of CGC

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