Cluster: HRGMv2_2099_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2099
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_76 | HRGMv2_2099_76_6 | 6096 | 7118 | + | 2.A.56.1.5 |
| TC | HRGMv2_2099_76 | HRGMv2_2099_76_7 | 7130 | 7606 | + | 2.A.56.1.5 |
| TC | HRGMv2_2099_76 | HRGMv2_2099_76_8 | 7607 | 8911 | + | 2.A.56.1.5 |
| CAZyme | HRGMv2_2099_76 | HRGMv2_2099_76_9 | 8928 | 10046 | + | GH105 |
| CAZyme | HRGMv2_2099_76 | HRGMv2_2099_76_10 | 10200 | 11069 | + | CE4 |
Gene ID: HRGMv2_2099_76_6
Type: TC
Location: 6096 - 7118 (+)
Type: TC
Location: 6096 - 7118 (+)
Gene ID: HRGMv2_2099_76_7
Type: TC
Location: 7130 - 7606 (+)
Type: TC
Location: 7130 - 7606 (+)
Gene ID: HRGMv2_2099_76_8
Type: TC
Location: 7607 - 8911 (+)
Type: TC
Location: 7607 - 8911 (+)
Gene ID: HRGMv2_2099_76_9
Type: CAZyme
Location: 8928 - 10046 (+)
Type: CAZyme
Location: 8928 - 10046 (+)
Gene ID: HRGMv2_2099_76_10
Type: CAZyme
Location: 10200 - 11069 (+)
Type: CAZyme
Location: 10200 - 11069 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_76_6 | vegan > omnivore | 1.15449 | 0.00732 |
| HRGMv2_2099_76_7 | vegan > omnivore | 17.29991 | 0.00732 |