Cluster: HRGMv2_2099_CGC13
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2099
- CGC Family ID: CGCFAM_00003
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_36 | HRGMv2_2099_36_3 | 1783 | 2457 | + | 9.B.18.1.2 |
| pfam | HRGMv2_2099_36 | HRGMv2_2099_36_4 | 2474 | 3478 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd |
| CAZyme | HRGMv2_2099_36 | HRGMv2_2099_36_5 | 3493 | 4257 | + | GT2 |
| CAZyme | HRGMv2_2099_36 | HRGMv2_2099_36_6 | 4269 | 5501 | + | GT4 |
Gene ID: HRGMv2_2099_36_3
Type: TC
Location: 1783 - 2457 (+)
Type: TC
Location: 1783 - 2457 (+)
Gene ID: HRGMv2_2099_36_4
Type: pfam
Location: 2474 - 3478 (+)
Type: pfam
Location: 2474 - 3478 (+)
Gene ID: HRGMv2_2099_36_5
Type: CAZyme
Location: 3493 - 4257 (+)
Type: CAZyme
Location: 3493 - 4257 (+)
Gene ID: HRGMv2_2099_36_6
Type: CAZyme
Location: 4269 - 5501 (+)
Type: CAZyme
Location: 4269 - 5501 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_36_4 | vegetarian > omnivore | 2.15489 | 0.00000 |
| HRGMv2_2099_36_4 | vegetarian > vegan | 2.91555 | 0.00290 |