Cluster: HRGMv2_2099_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2099
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2099_21 | HRGMv2_2099_21_17 | 13546 | 15774 | - | 3.A.11.3.1 |
| pfam | HRGMv2_2099_21 | HRGMv2_2099_21_18 | 15784 | 17250 | - | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| CAZyme | HRGMv2_2099_21 | HRGMv2_2099_21_19 | 17367 | 18647 | - | GH179 |
| pfam | HRGMv2_2099_21 | HRGMv2_2099_21_20 | 18709 | 19548 | - | AP_endonuc_2 |
| TC | HRGMv2_2099_21 | HRGMv2_2099_21_21 | 19879 | 21288 | - | 2.A.40.2.1 |
Gene ID: HRGMv2_2099_21_17
Type: TC
Location: 13546 - 15774 (-)
Type: TC
Location: 13546 - 15774 (-)
Gene ID: HRGMv2_2099_21_18
Type: pfam
Location: 15784 - 17250 (-)
Type: pfam
Location: 15784 - 17250 (-)
Gene ID: HRGMv2_2099_21_19
Type: CAZyme
Location: 17367 - 18647 (-)
Type: CAZyme
Location: 17367 - 18647 (-)
Gene ID: HRGMv2_2099_21_20
Type: pfam
Location: 18709 - 19548 (-)
Type: pfam
Location: 18709 - 19548 (-)
Gene ID: HRGMv2_2099_21_21
Type: TC
Location: 19879 - 21288 (-)
Type: TC
Location: 19879 - 21288 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp934435195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2099_21_17 | vegan > omnivore | 1.93781 | 0.00732 |