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Cluster: HRGMv2_2083_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2083_6 HRGMv2_2083_6_23 18232 24597 + PL9_1
pfam HRGMv2_2083_6 HRGMv2_2083_6_24 25248 28850 + SLH | SLH | SLH
NULL(UNKNOWN) HRGMv2_2083_6 HRGMv2_2083_6_25 28721 29023 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_2083_6 HRGMv2_2083_6_26 29222 35344 + CE12 | CE8
CAZyme HRGMv2_2083_6 HRGMv2_2083_6_27 35296 36888 + CE12
pfam HRGMv2_2083_6 HRGMv2_2083_6_28 37522 40050 + Cu_amine_oxidN1 | Cu_amine_oxidN1
pfam HRGMv2_2083_6 HRGMv2_2083_6_29 40304 40681 + ABC_trans_CmpB
TC HRGMv2_2083_6 HRGMv2_2083_6_30 40717 41247 - 9.B.156.3.1
Gene ID: HRGMv2_2083_6_23
Type: CAZyme
Location: 18232 - 24597 (+)
Gene ID: HRGMv2_2083_6_24
Type: pfam
Location: 25248 - 28850 (+)
Gene ID: HRGMv2_2083_6_25
Type:
Location: 28721 - 29023 (-)
Gene ID: HRGMv2_2083_6_26
Type: CAZyme
Location: 29222 - 35344 (+)
Gene ID: HRGMv2_2083_6_27
Type: CAZyme
Location: 35296 - 36888 (+)
Gene ID: HRGMv2_2083_6_28
Type: pfam
Location: 37522 - 40050 (+)
Gene ID: HRGMv2_2083_6_29
Type: pfam
Location: 40304 - 40681 (+)
Gene ID: HRGMv2_2083_6_30
Type: TC
Location: 40717 - 41247 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
CAG-274
→
Genus
CAG-274
→
Species
CAG-274 sp900545305

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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