Cluster: HRGMv2_2076_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- CGC Family ID: CGCFAM_04173
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_8 | HRGMv2_2076_8_48 | 52031 | 52942 | - | 9.B.70.1.1 |
| TC | HRGMv2_2076_8 | HRGMv2_2076_8_49 | 53153 | 54511 | + | 2.A.38.1.1 |
| TC | HRGMv2_2076_8 | HRGMv2_2076_8_50 | 54532 | 55977 | + | 2.A.38.1.1 |
| CAZyme | HRGMv2_2076_8 | HRGMv2_2076_8_51 | 56076 | 60611 | - | CBM23 | CBM27 | GH26 |
| pfam | HRGMv2_2076_8 | HRGMv2_2076_8_52 | 60913 | 61779 | - | AP_endonuc_2 |
| TC | HRGMv2_2076_8 | HRGMv2_2076_8_53 | 61874 | 63232 | - | 1.A.26.1.1 |
Gene ID: HRGMv2_2076_8_48
Type: TC
Location: 52031 - 52942 (-)
Type: TC
Location: 52031 - 52942 (-)
Gene ID: HRGMv2_2076_8_49
Type: TC
Location: 53153 - 54511 (+)
Type: TC
Location: 53153 - 54511 (+)
Gene ID: HRGMv2_2076_8_50
Type: TC
Location: 54532 - 55977 (+)
Type: TC
Location: 54532 - 55977 (+)
Gene ID: HRGMv2_2076_8_51
Type: CAZyme
Location: 56076 - 60611 (-)
Type: CAZyme
Location: 56076 - 60611 (-)
Gene ID: HRGMv2_2076_8_52
Type: pfam
Location: 60913 - 61779 (-)
Type: pfam
Location: 60913 - 61779 (-)
Gene ID: HRGMv2_2076_8_53
Type: TC
Location: 61874 - 63232 (-)
Type: TC
Location: 61874 - 63232 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_8_48 | vegetarian > vegan | 1.41957 | 0.00290 |