Cluster: HRGMv2_2076_CGC5
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2076_4 | HRGMv2_2076_4_89 | 78859 | 80415 | + | GH28 |
| pfam | HRGMv2_2076_4 | HRGMv2_2076_4_90 | 80492 | 81328 | + | AP_endonuc_2 |
| pfam | HRGMv2_2076_4 | HRGMv2_2076_4_91 | 81383 | 82144 | + | ThiF |
| TC | HRGMv2_2076_4 | HRGMv2_2076_4_92 | 82217 | 83977 | + | 1.B.52.2.1 |
| STP | HRGMv2_2076_4 | HRGMv2_2076_4_93 | 84064 | 84624 | + | Sigma70_r2 | Sigma70_r4_2 |
| NULL(UNKNOWN) | HRGMv2_2076_4 | HRGMv2_2076_4_94 | 84637 | 85281 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2076_4 | HRGMv2_2076_4_95 | 85283 | 86632 | + | 2.A.66.1.33 |
Gene ID: HRGMv2_2076_4_89
Type: CAZyme
Location: 78859 - 80415 (+)
Type: CAZyme
Location: 78859 - 80415 (+)
Gene ID: HRGMv2_2076_4_90
Type: pfam
Location: 80492 - 81328 (+)
Type: pfam
Location: 80492 - 81328 (+)
Gene ID: HRGMv2_2076_4_91
Type: pfam
Location: 81383 - 82144 (+)
Type: pfam
Location: 81383 - 82144 (+)
Gene ID: HRGMv2_2076_4_92
Type: TC
Location: 82217 - 83977 (+)
Type: TC
Location: 82217 - 83977 (+)
Gene ID: HRGMv2_2076_4_93
Type: STP
Location: 84064 - 84624 (+)
Type: STP
Location: 84064 - 84624 (+)
Gene ID: HRGMv2_2076_4_94
Type:
Location: 84637 - 85281 (+)
Type:
Location: 84637 - 85281 (+)
Gene ID: HRGMv2_2076_4_95
Type: TC
Location: 85283 - 86632 (+)
Type: TC
Location: 85283 - 86632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_4_94 | vegetarian > vegan | 1.11820 | 0.00290 |