Cluster: HRGMv2_2076_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2076
- CGC Family ID: CGCFAM_05916
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_107 | HRGMv2_2076_107_1 | 1 | 885 | + | 3.A.1.1.4 |
| TC | HRGMv2_2076_107 | HRGMv2_2076_107_2 | 882 | 1706 | + | 3.A.1.1.45 |
| CAZyme | HRGMv2_2076_107 | HRGMv2_2076_107_3 | 1711 | 3108 | + | GH28 |
| CAZyme | HRGMv2_2076_107 | HRGMv2_2076_107_4 | 3121 | 4008 | + | GH43_17 |
Gene ID: HRGMv2_2076_107_1
Type: TC
Location: 1 - 885 (+)
Type: TC
Location: 1 - 885 (+)
Gene ID: HRGMv2_2076_107_2
Type: TC
Location: 882 - 1706 (+)
Type: TC
Location: 882 - 1706 (+)
Gene ID: HRGMv2_2076_107_3
Type: CAZyme
Location: 1711 - 3108 (+)
Type: CAZyme
Location: 1711 - 3108 (+)
Gene ID: HRGMv2_2076_107_4
Type: CAZyme
Location: 3121 - 4008 (+)
Type: CAZyme
Location: 3121 - 4008 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_107_1 | vegetarian > omnivore | 2.22838 | 0.02539 |
| HRGMv2_2076_107_1 | vegetarian > vegan | 3.49461 | 0.00290 |
| HRGMv2_2076_107_2 | vegetarian > omnivore | 1.75149 | 0.02539 |
| HRGMv2_2076_107_2 | vegetarian > vegan | 1.58281 | 0.00290 |