Cluster: HRGMv2_2076_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2076_98 | HRGMv2_2076_98_1 | 3 | 1808 | - | GH36 |
| TC | HRGMv2_2076_98 | HRGMv2_2076_98_2 | 1831 | 2673 | - | 3.A.1.1.28 |
| TC | HRGMv2_2076_98 | HRGMv2_2076_98_3 | 2670 | 3545 | - | 3.A.1.1.45 |
| TC | HRGMv2_2076_98 | HRGMv2_2076_98_4 | 3542 | 4843 | - | 3.A.1.1.28 |
Gene ID: HRGMv2_2076_98_1
Type: CAZyme
Location: 3 - 1808 (-)
Type: CAZyme
Location: 3 - 1808 (-)
Gene ID: HRGMv2_2076_98_2
Type: TC
Location: 1831 - 2673 (-)
Type: TC
Location: 1831 - 2673 (-)
Gene ID: HRGMv2_2076_98_3
Type: TC
Location: 2670 - 3545 (-)
Type: TC
Location: 2670 - 3545 (-)
Gene ID: HRGMv2_2076_98_4
Type: TC
Location: 3542 - 4843 (-)
Type: TC
Location: 3542 - 4843 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_98_1 | vegan > omnivore | 1.21225 | 0.03564 |