Cluster: HRGMv2_2076_CGC4
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2076
- CGC Family ID: CGCFAM_00046
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_31 | 51022 | 52797 | + | 3.A.1.106.14 |
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_32 | 52784 | 54469 | + | 3.A.1.135.9 |
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_33 | 54676 | 56049 | - | 2.A.22.5.3 |
| TF | HRGMv2_2076_2 | HRGMv2_2076_2_34 | 56228 | 56773 | + | SpoVT_AbrB |
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_35 | 56792 | 58078 | - | 9.B.34.1.2 |
| pfam | HRGMv2_2076_2 | HRGMv2_2076_2_36 | 58588 | 61740 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | DUF5915 |
| CAZyme | HRGMv2_2076_2 | HRGMv2_2076_2_37 | 62003 | 64507 | + | GT35 |
| NULL(UNKNOWN) | HRGMv2_2076_2 | HRGMv2_2076_2_38 | 64612 | 65283 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2076_2 | HRGMv2_2076_2_39 | 66531 | 68585 | - | CBM61 | GH53 |
Gene ID: HRGMv2_2076_2_31
Type: TC
Location: 51022 - 52797 (+)
Type: TC
Location: 51022 - 52797 (+)
Gene ID: HRGMv2_2076_2_32
Type: TC
Location: 52784 - 54469 (+)
Type: TC
Location: 52784 - 54469 (+)
Gene ID: HRGMv2_2076_2_33
Type: TC
Location: 54676 - 56049 (-)
Type: TC
Location: 54676 - 56049 (-)
Gene ID: HRGMv2_2076_2_34
Type: TF
Location: 56228 - 56773 (+)
Type: TF
Location: 56228 - 56773 (+)
Gene ID: HRGMv2_2076_2_35
Type: TC
Location: 56792 - 58078 (-)
Type: TC
Location: 56792 - 58078 (-)
Gene ID: HRGMv2_2076_2_36
Type: pfam
Location: 58588 - 61740 (+)
Type: pfam
Location: 58588 - 61740 (+)
Gene ID: HRGMv2_2076_2_37
Type: CAZyme
Location: 62003 - 64507 (+)
Type: CAZyme
Location: 62003 - 64507 (+)
Gene ID: HRGMv2_2076_2_38
Type:
Location: 64612 - 65283 (-)
Type:
Location: 64612 - 65283 (-)
Gene ID: HRGMv2_2076_2_39
Type: CAZyme
Location: 66531 - 68585 (-)
Type: CAZyme
Location: 66531 - 68585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.