Cluster: HRGMv2_2076_CGC36
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2076
- CGC Family ID: CGCFAM_00806
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_57 | HRGMv2_2076_57_4 | 2914 | 3810 | + | 3.A.1.1.20 |
| TC | HRGMv2_2076_57 | HRGMv2_2076_57_5 | 3825 | 4703 | + | 3.A.1.1.36 |
| CAZyme | HRGMv2_2076_57 | HRGMv2_2076_57_6 | 4736 | 7006 | + | GH65 |
| CAZyme | HRGMv2_2076_57 | HRGMv2_2076_57_7 | 7018 | 9198 | + | GH65 |
| TF | HRGMv2_2076_57 | HRGMv2_2076_57_8 | 9185 | 10195 | - | LacI |
| pfam | HRGMv2_2076_57 | HRGMv2_2076_57_9 | 10279 | 10926 | + | Hydrolase | Hydrolase_like | HAD_2 |
| CAZyme | HRGMv2_2076_57 | HRGMv2_2076_57_10 | 10943 | 12505 | + | GH28 |
Gene ID: HRGMv2_2076_57_4
Type: TC
Location: 2914 - 3810 (+)
Type: TC
Location: 2914 - 3810 (+)
Gene ID: HRGMv2_2076_57_5
Type: TC
Location: 3825 - 4703 (+)
Type: TC
Location: 3825 - 4703 (+)
Gene ID: HRGMv2_2076_57_6
Type: CAZyme
Location: 4736 - 7006 (+)
Type: CAZyme
Location: 4736 - 7006 (+)
Gene ID: HRGMv2_2076_57_7
Type: CAZyme
Location: 7018 - 9198 (+)
Type: CAZyme
Location: 7018 - 9198 (+)
Gene ID: HRGMv2_2076_57_8
Type: TF
Location: 9185 - 10195 (-)
Type: TF
Location: 9185 - 10195 (-)
Gene ID: HRGMv2_2076_57_9
Type: pfam
Location: 10279 - 10926 (+)
Type: pfam
Location: 10279 - 10926 (+)
Gene ID: HRGMv2_2076_57_10
Type: CAZyme
Location: 10943 - 12505 (+)
Type: CAZyme
Location: 10943 - 12505 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_57_4 | vegetarian > omnivore | 1.22112 | 0.02539 |
| HRGMv2_2076_57_4 | vegetarian > vegan | 1.39151 | 0.00290 |
| HRGMv2_2076_57_5 | vegetarian > vegan | 2.00744 | 0.00290 |
| HRGMv2_2076_57_6 | vegetarian > vegan | 1.63691 | 0.00290 |
| HRGMv2_2076_57_7 | vegetarian > vegan | 1.37787 | 0.00290 |
| HRGMv2_2076_57_8 | vegetarian > omnivore | 1.40804 | 0.02539 |
| HRGMv2_2076_57_8 | vegetarian > vegan | 1.68707 | 0.00290 |
| HRGMv2_2076_57_9 | vegetarian > omnivore | 2.57382 | 0.02539 |
| HRGMv2_2076_57_9 | vegetarian > vegan | 2.73347 | 0.00290 |
| HRGMv2_2076_57_10 | vegetarian > omnivore | 1.97522 | 0.02539 |
| HRGMv2_2076_57_10 | vegetarian > vegan | 1.96004 | 0.00290 |