Cluster: HRGMv2_2076_CGC30
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_7 | 6080 | 6841 | + | GT2 |
| TC | HRGMv2_2076_37 | HRGMv2_2076_37_8 | 6851 | 8305 | + | 9.B.18.1.3 |
| NULL(UNKNOWN) | HRGMv2_2076_37 | HRGMv2_2076_37_9 | 8346 | 9509 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_10 | 9506 | 10288 | + | GT2 |
| pfam | HRGMv2_2076_37 | HRGMv2_2076_37_11 | 10310 | 11443 | + | EpsG |
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_12 | 11580 | 13001 | + | GT4 |
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_13 | 13004 | 14284 | + | GT4 |
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_14 | 14281 | 15297 | + | GT2 |
| CAZyme | HRGMv2_2076_37 | HRGMv2_2076_37_15 | 15328 | 17433 | + | GH73 |
Gene ID: HRGMv2_2076_37_7
Type: CAZyme
Location: 6080 - 6841 (+)
Type: CAZyme
Location: 6080 - 6841 (+)
Gene ID: HRGMv2_2076_37_8
Type: TC
Location: 6851 - 8305 (+)
Type: TC
Location: 6851 - 8305 (+)
Gene ID: HRGMv2_2076_37_9
Type:
Location: 8346 - 9509 (+)
Type:
Location: 8346 - 9509 (+)
Gene ID: HRGMv2_2076_37_10
Type: CAZyme
Location: 9506 - 10288 (+)
Type: CAZyme
Location: 9506 - 10288 (+)
Gene ID: HRGMv2_2076_37_11
Type: pfam
Location: 10310 - 11443 (+)
Type: pfam
Location: 10310 - 11443 (+)
Gene ID: HRGMv2_2076_37_12
Type: CAZyme
Location: 11580 - 13001 (+)
Type: CAZyme
Location: 11580 - 13001 (+)
Gene ID: HRGMv2_2076_37_13
Type: CAZyme
Location: 13004 - 14284 (+)
Type: CAZyme
Location: 13004 - 14284 (+)
Gene ID: HRGMv2_2076_37_14
Type: CAZyme
Location: 14281 - 15297 (+)
Type: CAZyme
Location: 14281 - 15297 (+)
Gene ID: HRGMv2_2076_37_15
Type: CAZyme
Location: 15328 - 17433 (+)
Type: CAZyme
Location: 15328 - 17433 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_37_9 | vegetarian > vegan | 1.27699 | 0.00290 |
| HRGMv2_2076_37_10 | vegetarian > vegan | 1.05508 | 0.00290 |
| HRGMv2_2076_37_12 | vegetarian > vegan | 1.14352 | 0.00290 |
| HRGMv2_2076_37_13 | vegetarian > vegan | 1.09192 | 0.00290 |
| HRGMv2_2076_37_14 | vegetarian > vegan | 1.03105 | 0.00290 |
| HRGMv2_2076_37_15 | vegetarian > vegan | 1.37720 | 0.00290 |