Cluster: HRGMv2_2076_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_18 | 34617 | 35627 | + | 3.A.1.1.20 |
| TC | HRGMv2_2076_2 | HRGMv2_2076_2_19 | 35629 | 36495 | + | 3.A.1.1.47 |
| pfam | HRGMv2_2076_2 | HRGMv2_2076_2_20 | 36517 | 37707 | + | GlcNAc_2-epim |
| CAZyme | HRGMv2_2076_2 | HRGMv2_2076_2_21 | 37784 | 38959 | + | GH130_1 |
| CAZyme | HRGMv2_2076_2 | HRGMv2_2076_2_22 | 38985 | 40007 | + | GH130_2 |
| CAZyme | HRGMv2_2076_2 | HRGMv2_2076_2_23 | 40057 | 43140 | + | CBM35inCE17 | CE17 |
Gene ID: HRGMv2_2076_2_18
Type: TC
Location: 34617 - 35627 (+)
Type: TC
Location: 34617 - 35627 (+)
Gene ID: HRGMv2_2076_2_19
Type: TC
Location: 35629 - 36495 (+)
Type: TC
Location: 35629 - 36495 (+)
Gene ID: HRGMv2_2076_2_20
Type: pfam
Location: 36517 - 37707 (+)
Type: pfam
Location: 36517 - 37707 (+)
Gene ID: HRGMv2_2076_2_21
Type: CAZyme
Location: 37784 - 38959 (+)
Type: CAZyme
Location: 37784 - 38959 (+)
Gene ID: HRGMv2_2076_2_22
Type: CAZyme
Location: 38985 - 40007 (+)
Type: CAZyme
Location: 38985 - 40007 (+)
Gene ID: HRGMv2_2076_2_23
Type: CAZyme
Location: 40057 - 43140 (+)
Type: CAZyme
Location: 40057 - 43140 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.