Cluster: HRGMv2_2076_CGC27
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_6 | 5679 | 6671 | - | 3.A.1.5.20 |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_7 | 6673 | 7647 | - | 3.A.1.5.20 |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_8 | 7669 | 8493 | - | 3.A.1.5.39 |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_9 | 8506 | 9456 | - | 3.A.1.5.11 |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_10 | 9586 | 11214 | - | 3.A.1.5.11 |
| TF | HRGMv2_2076_34 | HRGMv2_2076_34_11 | 11406 | 12344 | - | HTH_1 |
| pfam | HRGMv2_2076_34 | HRGMv2_2076_34_12 | 12493 | 13338 | - | Polysacc_deac_1 |
| CAZyme | HRGMv2_2076_34 | HRGMv2_2076_34_13 | 13335 | 14189 | - | CE4 |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_14 | 14203 | 15552 | - | 2.A.66.1.26 |
| pfam | HRGMv2_2076_34 | HRGMv2_2076_34_15 | 15573 | 16208 | - | Asp_Glu_race |
| peptidase | HRGMv2_2076_34 | HRGMv2_2076_34_16 | 16205 | 17614 | - | M38.UNW |
| TC | HRGMv2_2076_34 | HRGMv2_2076_34_17 | 17836 | 18471 | + | 2.A.115.2.14 |
Gene ID: HRGMv2_2076_34_6
Type: TC
Location: 5679 - 6671 (-)
Type: TC
Location: 5679 - 6671 (-)
Gene ID: HRGMv2_2076_34_7
Type: TC
Location: 6673 - 7647 (-)
Type: TC
Location: 6673 - 7647 (-)
Gene ID: HRGMv2_2076_34_8
Type: TC
Location: 7669 - 8493 (-)
Type: TC
Location: 7669 - 8493 (-)
Gene ID: HRGMv2_2076_34_9
Type: TC
Location: 8506 - 9456 (-)
Type: TC
Location: 8506 - 9456 (-)
Gene ID: HRGMv2_2076_34_10
Type: TC
Location: 9586 - 11214 (-)
Type: TC
Location: 9586 - 11214 (-)
Gene ID: HRGMv2_2076_34_11
Type: TF
Location: 11406 - 12344 (-)
Type: TF
Location: 11406 - 12344 (-)
Gene ID: HRGMv2_2076_34_12
Type: pfam
Location: 12493 - 13338 (-)
Type: pfam
Location: 12493 - 13338 (-)
Gene ID: HRGMv2_2076_34_13
Type: CAZyme
Location: 13335 - 14189 (-)
Type: CAZyme
Location: 13335 - 14189 (-)
Gene ID: HRGMv2_2076_34_14
Type: TC
Location: 14203 - 15552 (-)
Type: TC
Location: 14203 - 15552 (-)
Gene ID: HRGMv2_2076_34_15
Type: pfam
Location: 15573 - 16208 (-)
Type: pfam
Location: 15573 - 16208 (-)
Gene ID: HRGMv2_2076_34_16
Type: peptidase
Location: 16205 - 17614 (-)
Type: peptidase
Location: 16205 - 17614 (-)
Gene ID: HRGMv2_2076_34_17
Type: TC
Location: 17836 - 18471 (+)
Type: TC
Location: 17836 - 18471 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.