Cluster: HRGMv2_2076_CGC23
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_1 | 1 | 2973 | + | GH25 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_2 | 3345 | 4430 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_3 | 4508 | 5377 | + | NTP_transferase | NTP_transf_3 |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_4 | 5367 | 6671 | + | GH25 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_5 | 6772 | 7368 | + | dTDP_sugar_isom |
| TC | HRGMv2_2076_28 | HRGMv2_2076_28_6 | 7331 | 8347 | + | 3.A.1.104.1 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_7 | 8438 | 9964 | + | DUF6056 |
| TC | HRGMv2_2076_28 | HRGMv2_2076_28_8 | 9971 | 11311 | + | 3.A.1.103.6 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_9 | 11315 | 13387 | + | PCMT | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_10 | 13421 | 15460 | + | GT2 |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_11 | 15491 | 17560 | + | GT2 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_12 | 17658 | 19379 | + | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_13 | 19480 | 20907 | + | GT2 |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_14 | 20904 | 21896 | + | GT2 |
| TC | HRGMv2_2076_28 | HRGMv2_2076_28_15 | 22043 | 23404 | + | 9.B.18.1.1 |
| pfam | HRGMv2_2076_28 | HRGMv2_2076_28_16 | 23433 | 24650 | + | LytR_cpsA_psr |
| CAZyme | HRGMv2_2076_28 | HRGMv2_2076_28_17 | 24781 | 25719 | + | GT2 |
Gene ID: HRGMv2_2076_28_1
Type: CAZyme
Location: 1 - 2973 (+)
Type: CAZyme
Location: 1 - 2973 (+)
Gene ID: HRGMv2_2076_28_2
Type: pfam
Location: 3345 - 4430 (+)
Type: pfam
Location: 3345 - 4430 (+)
Gene ID: HRGMv2_2076_28_3
Type: pfam
Location: 4508 - 5377 (+)
Type: pfam
Location: 4508 - 5377 (+)
Gene ID: HRGMv2_2076_28_4
Type: CAZyme
Location: 5367 - 6671 (+)
Type: CAZyme
Location: 5367 - 6671 (+)
Gene ID: HRGMv2_2076_28_5
Type: pfam
Location: 6772 - 7368 (+)
Type: pfam
Location: 6772 - 7368 (+)
Gene ID: HRGMv2_2076_28_6
Type: TC
Location: 7331 - 8347 (+)
Type: TC
Location: 7331 - 8347 (+)
Gene ID: HRGMv2_2076_28_7
Type: pfam
Location: 8438 - 9964 (+)
Type: pfam
Location: 8438 - 9964 (+)
Gene ID: HRGMv2_2076_28_8
Type: TC
Location: 9971 - 11311 (+)
Type: TC
Location: 9971 - 11311 (+)
Gene ID: HRGMv2_2076_28_9
Type: pfam
Location: 11315 - 13387 (+)
Type: pfam
Location: 11315 - 13387 (+)
Gene ID: HRGMv2_2076_28_10
Type: CAZyme
Location: 13421 - 15460 (+)
Type: CAZyme
Location: 13421 - 15460 (+)
Gene ID: HRGMv2_2076_28_11
Type: CAZyme
Location: 15491 - 17560 (+)
Type: CAZyme
Location: 15491 - 17560 (+)
Gene ID: HRGMv2_2076_28_12
Type: pfam
Location: 17658 - 19379 (+)
Type: pfam
Location: 17658 - 19379 (+)
Gene ID: HRGMv2_2076_28_13
Type: CAZyme
Location: 19480 - 20907 (+)
Type: CAZyme
Location: 19480 - 20907 (+)
Gene ID: HRGMv2_2076_28_14
Type: CAZyme
Location: 20904 - 21896 (+)
Type: CAZyme
Location: 20904 - 21896 (+)
Gene ID: HRGMv2_2076_28_15
Type: TC
Location: 22043 - 23404 (+)
Type: TC
Location: 22043 - 23404 (+)
Gene ID: HRGMv2_2076_28_16
Type: pfam
Location: 23433 - 24650 (+)
Type: pfam
Location: 23433 - 24650 (+)
Gene ID: HRGMv2_2076_28_17
Type: CAZyme
Location: 24781 - 25719 (+)
Type: CAZyme
Location: 24781 - 25719 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_28_1 | vegetarian > vegan | 1.05542 | 0.00290 |