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Cluster: HRGMv2_2076_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2076_1 HRGMv2_2076_1_74 70666 71748 - 2.A.86.1.9
pfam HRGMv2_2076_1 HRGMv2_2076_1_75 71794 72564 - PseudoU_synth_2
pfam HRGMv2_2076_1 HRGMv2_2076_1_76 72592 74019 - Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI
CAZyme HRGMv2_2076_1 HRGMv2_2076_1_77 74226 75398 + GH5_2
pfam HRGMv2_2076_1 HRGMv2_2076_1_78 75449 76009 - DUF436
TC HRGMv2_2076_1 HRGMv2_2076_1_79 76084 77229 - 2.A.45.2.6
pfam HRGMv2_2076_1 HRGMv2_2076_1_80 77315 77902 + Mntp | Mntp
TC HRGMv2_2076_1 HRGMv2_2076_1_81 78012 79475 + 9.A.11.1.1
NULL(UNKNOWN) HRGMv2_2076_1 HRGMv2_2076_1_82 79947 80624 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_2076_1 HRGMv2_2076_1_83 80710 82101 - MatE | MatE
CAZyme HRGMv2_2076_1 HRGMv2_2076_1_84 82182 82949 - CE8
TC HRGMv2_2076_1 HRGMv2_2076_1_85 82973 83923 - 3.A.1.5.20
TC HRGMv2_2076_1 HRGMv2_2076_1_86 83911 84957 - 3.A.1.5.20
TC HRGMv2_2076_1 HRGMv2_2076_1_87 84972 85862 - 3.A.1.5.39
TC HRGMv2_2076_1 HRGMv2_2076_1_88 85881 86813 - 3.A.1.5.20
TC HRGMv2_2076_1 HRGMv2_2076_1_89 86827 88437 - 3.A.1.5.3
CAZyme HRGMv2_2076_1 HRGMv2_2076_1_90 88454 89995 - GH28
Gene ID: HRGMv2_2076_1_74
Type: TC
Location: 70666 - 71748 (-)
Gene ID: HRGMv2_2076_1_75
Type: pfam
Location: 71794 - 72564 (-)
Gene ID: HRGMv2_2076_1_76
Type: pfam
Location: 72592 - 74019 (-)
Gene ID: HRGMv2_2076_1_77
Type: CAZyme
Location: 74226 - 75398 (+)
Gene ID: HRGMv2_2076_1_78
Type: pfam
Location: 75449 - 76009 (-)
Gene ID: HRGMv2_2076_1_79
Type: TC
Location: 76084 - 77229 (-)
Gene ID: HRGMv2_2076_1_80
Type: pfam
Location: 77315 - 77902 (+)
Gene ID: HRGMv2_2076_1_81
Type: TC
Location: 78012 - 79475 (+)
Gene ID: HRGMv2_2076_1_82
Type:
Location: 79947 - 80624 (-)
Gene ID: HRGMv2_2076_1_83
Type: pfam
Location: 80710 - 82101 (-)
Gene ID: HRGMv2_2076_1_84
Type: CAZyme
Location: 82182 - 82949 (-)
Gene ID: HRGMv2_2076_1_85
Type: TC
Location: 82973 - 83923 (-)
Gene ID: HRGMv2_2076_1_86
Type: TC
Location: 83911 - 84957 (-)
Gene ID: HRGMv2_2076_1_87
Type: TC
Location: 84972 - 85862 (-)
Gene ID: HRGMv2_2076_1_88
Type: TC
Location: 85881 - 86813 (-)
Gene ID: HRGMv2_2076_1_89
Type: TC
Location: 86827 - 88437 (-)
Gene ID: HRGMv2_2076_1_90
Type: CAZyme
Location: 88454 - 89995 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Lachnospirales
→
Family
Lachnospiraceae
→
Genus
Acetatifactor
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2076_1_74 vegetarian > vegan 1.25217 0.00290
HRGMv2_2076_1_75 vegetarian > vegan 1.20163 0.00290

🧭 Explore Read Mapping of CGC

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