Cluster: HRGMv2_2076_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2076
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2076_11 | HRGMv2_2076_11_2 | 1651 | 3912 | + | 2.A.6.4.2 |
| pfam | HRGMv2_2076_11 | HRGMv2_2076_11_3 | 4303 | 5496 | + | CBM26 | CBM26 | CBM26 |
| TC | HRGMv2_2076_11 | HRGMv2_2076_11_4 | 5545 | 6804 | + | 3.A.1.1.16 |
| TC | HRGMv2_2076_11 | HRGMv2_2076_11_5 | 6858 | 7787 | + | 3.A.1.1.2 |
| TC | HRGMv2_2076_11 | HRGMv2_2076_11_6 | 7784 | 8626 | + | 3.A.1.1.2 |
| CAZyme | HRGMv2_2076_11 | HRGMv2_2076_11_7 | 8645 | 10390 | + | CBM34 | GH13_20 |
Gene ID: HRGMv2_2076_11_2
Type: TC
Location: 1651 - 3912 (+)
Type: TC
Location: 1651 - 3912 (+)
Gene ID: HRGMv2_2076_11_3
Type: pfam
Location: 4303 - 5496 (+)
Type: pfam
Location: 4303 - 5496 (+)
Gene ID: HRGMv2_2076_11_4
Type: TC
Location: 5545 - 6804 (+)
Type: TC
Location: 5545 - 6804 (+)
Gene ID: HRGMv2_2076_11_5
Type: TC
Location: 6858 - 7787 (+)
Type: TC
Location: 6858 - 7787 (+)
Gene ID: HRGMv2_2076_11_6
Type: TC
Location: 7784 - 8626 (+)
Type: TC
Location: 7784 - 8626 (+)
Gene ID: HRGMv2_2076_11_7
Type: CAZyme
Location: 8645 - 10390 (+)
Type: CAZyme
Location: 8645 - 10390 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Acetatifactor
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2076_11_3 | vegetarian > vegan | 1.05477 | 0.00290 |
| HRGMv2_2076_11_6 | vegetarian > vegan | 1.01501 | 0.00290 |
| HRGMv2_2076_11_7 | vegetarian > vegan | 1.00465 | 0.00290 |